Hi,
Here we will learn various Procedures of Molecular modelling; along side the methods to judge and select a method of modelling.
Modeller :-
Download the software from https://salilab.org/modeller/
You will require a modeller key that can be obtained via registering on the site.
1. Start with the sequence of protein of your interest and run the BLASTp for PDB database.
2. Get one or the multiple pdb protein files that you wish to use for the process of modelling. But the question is if one should use single or multiple templates.
2a. Blast for the case of single templates
Here we will learn various Procedures of Molecular modelling; along side the methods to judge and select a method of modelling.
Modeller :-
Download the software from https://salilab.org/modeller/
You will require a modeller key that can be obtained via registering on the site.
1. Start with the sequence of protein of your interest and run the BLASTp for PDB database.
2. Get one or the multiple pdb protein files that you wish to use for the process of modelling. But the question is if one should use single or multiple templates.
2a. Blast for the case of single templates